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SCOTT TYLER
Bench and computational biologist
This website is dedicated to my wet bench and computational biology projects - particularly those that are post-publication. If anyone would like to collaborate on any projects, has suggestions, or needs help with my research - feel free to get in touch!
Taking a data science approach to hypothesis generation and bench validation
PyMINEr
RESEARCH
From a single (brief) command line call, PyMINEr will perform the following informatics tasks:
unsupervised clustering
basic statistics & enrichment analyses
pathway analyses
Spearman correlation-based expression graphs that enable analyses by graph theory
creation of in silico predicted autocrine/paracrine signaling networks within and across cell types (if using scRNAseq)
creation of publication-ready visuals based on these analyses
generation of a web page explaining the results of the run
Future releases will contain updated clustering methods that work for reconstructing single cell lineages.
CONTACT US
Thanks for your interest in my research. Feel free to get in touch for any questions or comments regarding my work and publications.